BamTools
2.5.2
BamTools
BamMultiReader
BamTools::BamMultiReader Member List
This is the complete list of members for
BamTools::BamMultiReader
, including all inherited members.
BamMultiReader
()
BamTools::BamMultiReader
Close
()
BamTools::BamMultiReader
CloseFile
(const std::string &filename)
BamTools::BamMultiReader
CreateIndexes
(const BamIndex::IndexType &type=BamIndex::STANDARD)
BamTools::BamMultiReader
Filenames
() const
BamTools::BamMultiReader
GetErrorString
() const
BamTools::BamMultiReader
GetHeader
() const
BamTools::BamMultiReader
GetHeaderText
() const
BamTools::BamMultiReader
GetMergeOrder
() const
BamTools::BamMultiReader
GetNextAlignment
(BamAlignment &alignment)
BamTools::BamMultiReader
GetNextAlignmentCore
(BamAlignment &alignment)
BamTools::BamMultiReader
GetReferenceCount
() const
BamTools::BamMultiReader
GetReferenceData
() const
BamTools::BamMultiReader
GetReferenceID
(const std::string &refName) const
BamTools::BamMultiReader
HasIndexes
() const
BamTools::BamMultiReader
HasOpenReaders
() const
BamTools::BamMultiReader
Jump
(int refID, int position=0)
BamTools::BamMultiReader
LocateIndexes
(const BamIndex::IndexType &preferredType=BamIndex::STANDARD)
BamTools::BamMultiReader
MergeByCoordinate
enum value
BamTools::BamMultiReader
MergeByName
enum value
BamTools::BamMultiReader
MergeOrder
enum name
BamTools::BamMultiReader
Open
(const std::vector< std::string > &filenames)
BamTools::BamMultiReader
OpenFile
(const std::string &filename)
BamTools::BamMultiReader
OpenIndexes
(const std::vector< std::string > &indexFilenames)
BamTools::BamMultiReader
Rewind
()
BamTools::BamMultiReader
RoundRobinMerge
enum value
BamTools::BamMultiReader
SetExplicitMergeOrder
(BamMultiReader::MergeOrder order)
BamTools::BamMultiReader
SetRegion
(const BamRegion ®ion)
BamTools::BamMultiReader
SetRegion
(const int &leftRefID, const int &leftPosition, const int &rightRefID, const int &rightPosition)
BamTools::BamMultiReader
~BamMultiReader
()
BamTools::BamMultiReader
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