BamTools 2.5.2
BamTools::BamReader Member List

This is the complete list of members for BamTools::BamReader, including all inherited members.

BamReader()BamTools::BamReader
Close()BamTools::BamReader
CreateIndex(const BamIndex::IndexType &type=BamIndex::STANDARD)BamTools::BamReader
GetConstSamHeader() constBamTools::BamReader
GetErrorString() constBamTools::BamReader
GetFilename() constBamTools::BamReader
GetHeader() constBamTools::BamReader
GetHeaderText() constBamTools::BamReader
GetNextAlignment(BamAlignment &alignment)BamTools::BamReader
GetNextAlignmentCore(BamAlignment &alignment)BamTools::BamReader
GetReferenceCount() constBamTools::BamReader
GetReferenceData() constBamTools::BamReader
GetReferenceID(const std::string &refName) constBamTools::BamReader
HasIndex() constBamTools::BamReader
IsOpen() constBamTools::BamReader
Jump(int refID, int position=0)BamTools::BamReader
LocateIndex(const BamIndex::IndexType &preferredType=BamIndex::STANDARD)BamTools::BamReader
Open(const std::string &filename)BamTools::BamReader
OpenIndex(const std::string &indexFilename)BamTools::BamReader
Rewind()BamTools::BamReader
SetIndex(BamIndex *index)BamTools::BamReader
SetRegion(const BamRegion &region)BamTools::BamReader
SetRegion(const int &leftRefID, const int &leftPosition, const int &rightRefID, const int &rightPosition)BamTools::BamReader
~BamReader()BamTools::BamReader